No. words: 1085; after pruning: 1059


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.7 (1,1:327)  319  0.00 0.30 0.30  USDA008F_E06_BF473056Ld07P017D03P017D09F1_040.ab1        1   328 (257)  C USDA008R_E06_BF473056Ld07P017D03P017D09R1_040.ab1   (172)   328     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  154 nodes

 79 str. conn. components

Path
    1  C USDA008R_E06_BF473056Ld07P017D03P017D09R1_040.ab1   500 
  198    USDA008F_E06_BF473056Ld07P017D03P017D09F1_040.ab1    25 
  206  C USDA008R_E06_BF473056Ld07P017D03P017D09R1_040.ab1   295 
  310    USDA008F_E06_BF473056Ld07P017D03P017D09F1_040.ab1   137 
  314  C USDA008R_E06_BF473056Ld07P017D03P017D09R1_040.ab1   187 
  362    USDA008F_E06_BF473056Ld07P017D03P017D09F1_040.ab1   189 
  366  C USDA008R_E06_BF473056Ld07P017D03P017D09R1_040.ab1   135 
  374    USDA008F_E06_BF473056Ld07P017D03P017D09F1_040.ab1   201 
  386  C USDA008R_E06_BF473056Ld07P017D03P017D09R1_040.ab1   115 
  394    USDA008F_E06_BF473056Ld07P017D03P017D09F1_040.ab1   221 
  418  C USDA008R_E06_BF473056Ld07P017D03P017D09R1_040.ab1    83 
  422    USDA008F_E06_BF473056Ld07P017D03P017D09F1_040.ab1   249 
  438  C USDA008R_E06_BF473056Ld07P017D03P017D09R1_040.ab1    63 
  442    USDA008F_E06_BF473056Ld07P017D03P017D09F1_040.ab1   269 
  462  C USDA008R_E06_BF473056Ld07P017D03P017D09R1_040.ab1    39 
  466    USDA008F_E06_BF473056Ld07P017D03P017D09F1_040.ab1   293 
Contig length: old 757, new 758

Contig length: old 758, new 758
New start: 0