No. words: 1060; after pruning: 1034


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.4 (1,1:311)  302  0.00 0.32 0.32  USDA008F_G06_BF473056Ld09P017D03P017D09F1_036.ab1        1   312 (179)  C USDA008R_G06_BF473056Ld09P017D03P017D09R1_036.ab1   (257)   312     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  150 nodes

 77 str. conn. components

Path
    1  C USDA008R_G06_BF473056Ld09P017D03P017D09R1_036.ab1   569 
  265    USDA008F_G06_BF473056Ld09P017D03P017D09F1_036.ab1     8 
  273  C USDA008R_G06_BF473056Ld09P017D03P017D09R1_036.ab1   297 
  287    USDA008F_G06_BF473056Ld09P017D03P017D09F1_036.ab1    29 
  295  C USDA008R_G06_BF473056Ld09P017D03P017D09R1_036.ab1   275 
  311    USDA008F_G06_BF473056Ld09P017D03P017D09F1_036.ab1    53 
  315  C USDA008R_G06_BF473056Ld09P017D03P017D09R1_036.ab1   255 
  327    USDA008F_G06_BF473056Ld09P017D03P017D09F1_036.ab1    69 
  335  C USDA008R_G06_BF473056Ld09P017D03P017D09R1_036.ab1   235 
  375    USDA008F_G06_BF473056Ld09P017D03P017D09F1_036.ab1   117 
  383  C USDA008R_G06_BF473056Ld09P017D03P017D09R1_036.ab1   187 
  395    USDA008F_G06_BF473056Ld09P017D03P017D09F1_036.ab1   137 
  411  C USDA008R_G06_BF473056Ld09P017D03P017D09R1_036.ab1   159 
  431    USDA008F_G06_BF473056Ld09P017D03P017D09F1_036.ab1   173 
  451  C USDA008R_G06_BF473056Ld09P017D03P017D09R1_036.ab1   119 
  459    USDA008F_G06_BF473056Ld09P017D03P017D09F1_036.ab1   201 
  487  C USDA008R_G06_BF473056Ld09P017D03P017D09R1_036.ab1    83 
  491    USDA008F_G06_BF473056Ld09P017D03P017D09F1_036.ab1   233 
  503  C USDA008R_G06_BF473056Ld09P017D03P017D09R1_036.ab1    67 
  511    USDA008F_G06_BF473056Ld09P017D03P017D09F1_036.ab1   253 
  515  C USDA008R_G06_BF473056Ld09P017D03P017D09R1_036.ab1    55 
  519    USDA008F_G06_BF473056Ld09P017D03P017D09F1_036.ab1   261 
  527  C USDA008R_G06_BF473056Ld09P017D03P017D09R1_036.ab1    43 
  531    USDA008F_G06_BF473056Ld09P017D03P017D09F1_036.ab1   273 
Contig length: old 748, new 749

Contig length: old 749, new 749
New start: 0