No. words: 537; after pruning: 511


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 2.7 (1,1:227)  216  0.00 0.44 0.44  USDA034F_F12_BF473056Sn31P035E09P017D031F1_086.ab1        4   228 (43)  C USDA034R_F12_BF473056Sn31P035E09P017D031R1_086.ab1   (41)   225     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  104 nodes

 54 str. conn. components

Path
    1  C USDA034R_F12_BF473056Sn31P035E09P017D031R1_086.ab1   266 
  122    USDA034F_F12_BF473056Sn31P035E09P017D031F1_086.ab1    83 
  126  C USDA034R_F12_BF473056Sn31P035E09P017D031R1_086.ab1   141 
  178    USDA034F_F12_BF473056Sn31P035E09P017D031F1_086.ab1   139 
Contig length: old 309, new 310

Contig length: old 310, new 310
New start: 0