No. words: 529; after pruning: 503


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 2.7 (1,1:210)  204  0.00 0.48 0.00  USDA034F_E10_BF473056Ta15P035E09P017D031F1_072.ab1        4   211 (59)  C USDA034R_E10_BF473056Ta15P035E09P017D031R1_072.ab1   (50)   209     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  102 nodes

 53 str. conn. components

Path
    1  C USDA034R_E10_BF473056Ta15P035E09P017D031R1_072.ab1   259 
  130    USDA034F_E10_BF473056Ta15P035E09P017D031F1_072.ab1    82 
  134  C USDA034R_E10_BF473056Ta15P035E09P017D031R1_072.ab1   126 
  170    USDA034F_E10_BF473056Ta15P035E09P017D031F1_072.ab1   122 
Contig length: old 318, new 318

Contig length: old 318, new 318
New start: 0