No. words: 668; after pruning: 642


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.8 (1,1:269)  243  2.22 0.37 0.37  USDA008F_B05_BF473056Tu02P017D03P017D09F1_045.ab1        1   270 (52)  C USDA008R_B05_BF473056Tu02P017D03P017D09R1_045.ab1   (76)   270     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  116 nodes

 60 str. conn. components

Path
    1  C USDA008R_B05_BF473056Tu02P017D03P017D09R1_045.ab1   346 
  329    USDA008F_B05_BF473056Tu02P017D03P017D09F1_045.ab1   252 
Contig length: old 398, new 399

Contig length: old 399, new 399
New start: 0 
S Change at: 80; seg lengths: entry 1, contig 1