No. words: 1831; after pruning: 1805


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 20.0 (1,1:915)  896  0.00 0.00 0.11  USDA010F_D09_BF474569As02P017G03P017G09F1_073.ab1        1   908 (0)  C USDA010R_D09_BF474569As02P017G03P017G09R1_073.ab1   (8)   915     9 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  452 nodes

 228 str. conn. components

Path
    1  C USDA010R_D09_BF474569As02P017G03P017G09R1_073.ab1   923 
   12    USDA010F_D09_BF474569As02P017G03P017G09F1_073.ab1     4 
  564  C USDA010R_D09_BF474569As02P017G03P017G09R1_073.ab1   360 
Contig length: old 923, new 923

Contig length: old 923, new 924
New start: 0 
I Change at: 911; seg lengths: entry 1, contig 0