No. words: 1734; after pruning: 1694


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:1245)  463  0.20 0.20 0.20  USDA010F_E09_BF474569At01P017G03P017G09F1_071.ab1      459   946 (0)  C USDA010R_E09_BF474569At01P017G03P017G09R1_071.ab1   (0)   788   301 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1    USDA010F_E09_BF474569At01P017G03P017G09F1_071.ab1     1 
  610  C USDA010R_E09_BF474569At01P017G03P017G09R1_071.ab1   637 
  638    USDA010F_E09_BF474569At01P017G03P017G09F1_071.ab1   638 
  662  C USDA010R_E09_BF474569At01P017G03P017G09R1_071.ab1   585 
  686    USDA010F_E09_BF474569At01P017G03P017G09F1_071.ab1   686 
  690  C USDA010R_E09_BF474569At01P017G03P017G09R1_071.ab1   557 
Contig length: old 1246, new 1246

Contig length: old 1246, new 1246
New start: 0