No. words: 1623; after pruning: 1597


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:1255)  350  0.00 0.27 0.00  USDA010F_F09_BF474569At02P017G03P017G09F1_069.ab1      530   895 (0)  C USDA010R_F09_BF474569At02P017G03P017G09R1_069.ab1   (0)   728   362 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  182 nodes

 93 str. conn. components

Path
    1    USDA010F_F09_BF474569At02P017G03P017G09F1_069.ab1     1 
  613  C USDA010R_F09_BF474569At02P017G03P017G09R1_069.ab1   645 
  629    USDA010F_F09_BF474569At02P017G03P017G09F1_069.ab1   629 
  649  C USDA010R_F09_BF474569At02P017G03P017G09R1_069.ab1   609 
Contig length: old 1256, new 1257

Contig length: old 1257, new 1257
New start: 0