No. words: 1457; after pruning: 1417


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:951)  500  0.20 0.00 0.00  USDA010F_G09_BF474569Ld01P017G03P017G09F1_067.ab1      216   720 (0)  C USDA010R_G09_BF474569Ld01P017G03P017G09R1_067.ab1   (0)   737   233 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1    USDA010F_G09_BF474569Ld01P017G03P017G09F1_067.ab1     1 
  419  C USDA010R_G09_BF474569Ld01P017G03P017G09R1_067.ab1   534 
  435    USDA010F_G09_BF474569Ld01P017G03P017G09F1_067.ab1   435 
  475  C USDA010R_G09_BF474569Ld01P017G03P017G09R1_067.ab1   478 
Contig length: old 952, new 952

Contig length: old 952, new 952
New start: 0