No. words: 1759; after pruning: 1733


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 16.1 (1,1:864)  792  0.37 0.00 0.12  USDA010F_A10_BF474569Ld03P017G03P017G09F1_080.ab1       52   862 (83)  C USDA010R_A10_BF474569Ld03P017G03P017G09R1_080.ab1   (0)   814     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  400 nodes

 202 str. conn. components

Path
    1    USDA010F_A10_BF474569Ld03P017G03P017G09F1_080.ab1     1 
  479  C USDA010R_A10_BF474569Ld03P017G03P017G09R1_080.ab1   387 
  846    USDA010F_A10_BF474569Ld03P017G03P017G09F1_080.ab1   846 
Contig length: old 945, new 945

Contig length: old 945, new 945
New start: 0