No. words: 1781; after pruning: 1755


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 17.9 (1,1:870)  855  0.00 0.12 0.00  USDA010F_C10_BF474569Ld05P017G03P017G09F1_076.ab1        1   865 (43)  C USDA010R_C10_BF474569Ld05P017G03P017G09R1_076.ab1   (1)   872     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  430 nodes

 217 str. conn. components

Path
    1  C USDA010R_C10_BF474569Ld05P017G03P017G09R1_076.ab1   873 
   13    USDA010F_C10_BF474569Ld05P017G03P017G09F1_076.ab1    11 
  397  C USDA010R_C10_BF474569Ld05P017G03P017G09R1_076.ab1   477 
  857    USDA010F_C10_BF474569Ld05P017G03P017G09F1_076.ab1   855 
Contig length: old 910, new 910

Contig length: old 910, new 910
New start: 0