No. words: 1725; after pruning: 1699


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 17.6 (1,1:861)  824  0.00 0.00 0.00  USDA010F_E10_BF474569Ld07P017G03P017G09F1_072.ab1       28   857 (33)  C USDA010R_E10_BF474569Ld07P017G03P017G09R1_072.ab1   (0)   835     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  414 nodes

 209 str. conn. components

Path
    1    USDA010F_E10_BF474569Ld07P017G03P017G09F1_072.ab1     1 
  613  C USDA010R_E10_BF474569Ld07P017G03P017G09R1_072.ab1   250 
  845    USDA010F_E10_BF474569Ld07P017G03P017G09F1_072.ab1   845 
Contig length: old 890, new 890

Contig length: old 890, new 890
New start: 0