No. words: 1710; after pruning: 1684


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.8 (1,1:947)  741  0.13 0.13 0.26  USDA010F_F10_BF474569Ld08P017G03P017G09F1_070.ab1      112   874 (0)  C USDA010R_F10_BF474569Ld08P017G03P017G09R1_070.ab1   (0)   836    75 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1    USDA010F_F10_BF474569Ld08P017G03P017G09F1_070.ab1     1 
  584  C USDA010R_F10_BF474569Ld08P017G03P017G09R1_070.ab1   365 
Contig length: old 948, new 948

Contig length: old 948, new 948
New start: 0