No. words: 1724; after pruning: 1698


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.2 (1,1:842)  815  0.00 0.00 0.00  USDA010F_H10_BF474569Ld10P017G03P017G09F1_066.ab1       23   843 (60)  C USDA010R_H10_BF474569Ld10P017G03P017G09R1_066.ab1   (0)   821     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  412 nodes

 208 str. conn. components

Path
    1    USDA010F_H10_BF474569Ld10P017G03P017G09F1_066.ab1     1 
  382  C USDA010R_H10_BF474569Ld10P017G03P017G09R1_066.ab1   462 
  614    USDA010F_H10_BF474569Ld10P017G03P017G09F1_066.ab1   614 
  650  C USDA010R_H10_BF474569Ld10P017G03P017G09R1_066.ab1   194 
  838    USDA010F_H10_BF474569Ld10P017G03P017G09F1_066.ab1   838 
Contig length: old 903, new 903

Contig length: old 903, new 903
New start: 0