No. words: 1391; after pruning: 1337


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.3 (1,1:1194)  185  1.02 0.00 0.00  USDA027F_G11_BF474569Sn25P035H09P017G091F1_083.ab1      480   675 (0)  C USDA027R_G11_BF474569Sn25P035H09P017G091R1_083.ab1   (0)   716   521 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  98 nodes

 51 str. conn. components

Path
    1    USDA027F_G11_BF474569Sn25P035H09P017G091F1_083.ab1     1 
  620  C USDA027R_G11_BF474569Sn25P035H09P017G091R1_083.ab1   576 
  624    USDA027F_G11_BF474569Sn25P035H09P017G091F1_083.ab1   624 
  628  C USDA027R_G11_BF474569Sn25P035H09P017G091R1_083.ab1   568 
  632    USDA027F_G11_BF474569Sn25P035H09P017G091F1_083.ab1   632 
  640  C USDA027R_G11_BF474569Sn25P035H09P017G091R1_083.ab1   556 
Contig length: old 1195, new 1195

Contig length: old 1195, new 1195
New start: 0 
S Change at: 271; seg lengths: entry 1, contig 1
S Change at: 404; seg lengths: entry 1, contig 1