No. words: 1487; after pruning: 1419


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.0 (1,1:1166)  315  0.62 0.00 0.00  USDA027F_B12_BF474569Sn27P035H09P017G091F1_094.ab1      333   652 (0)  C USDA027R_B12_BF474569Sn27P035H09P017G091R1_094.ab1   (0)   835   516 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  156 nodes

 80 str. conn. components

Path
    1    USDA027F_B12_BF474569Sn27P035H09P017G091F1_094.ab1     1 
  560  C USDA027R_B12_BF474569Sn27P035H09P017G091R1_094.ab1   608 
  564    USDA027F_B12_BF474569Sn27P035H09P017G091F1_094.ab1   564 
  572  C USDA027R_B12_BF474569Sn27P035H09P017G091R1_094.ab1   596 
Contig length: old 1167, new 1167

Contig length: old 1167, new 1167
New start: 0 
S Change at: 248; seg lengths: entry 1, contig 1
S Change at: 381; seg lengths: entry 1, contig 1