No. words: 1455; after pruning: 1387


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.6 (1,1:1109)  336  0.29 0.00 0.00  USDA027F_D12_BF474569Sn29P035H09P017G091F1_090.ab1      373   717 (0)  C USDA027R_D12_BF474569Sn29P035H09P017G091R1_090.ab1   (0)   738   394 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  170 nodes

 87 str. conn. components

Path
    1    USDA027F_D12_BF474569Sn29P035H09P017G091F1_090.ab1     1 
  540  C USDA027R_D12_BF474569Sn29P035H09P017G091R1_090.ab1   571 
  548    USDA027F_D12_BF474569Sn29P035H09P017G091F1_090.ab1   548 
  568  C USDA027R_D12_BF474569Sn29P035H09P017G091R1_090.ab1   543 
  596    USDA027F_D12_BF474569Sn29P035H09P017G091F1_090.ab1   596 
  600  C USDA027R_D12_BF474569Sn29P035H09P017G091R1_090.ab1   511 
  604    USDA027F_D12_BF474569Sn29P035H09P017G091F1_090.ab1   604 
  608  C USDA027R_D12_BF474569Sn29P035H09P017G091R1_090.ab1   503 
Contig length: old 1110, new 1110

Contig length: old 1110, new 1110
New start: 0 
S Change at: 230; seg lengths: entry 1, contig 1
S Change at: 363; seg lengths: entry 1, contig 1