No. words: 1611; after pruning: 1571


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.1 (1,1:881)  712  0.41 0.00 0.14  USDA027F_C08_BF474569Ta11P035F09P017G091F1_060.ab1       60   788 (0)  C USDA027R_C08_BF474569Ta11P035F09P017G091R1_060.ab1   (0)   823    96 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1    USDA027F_C08_BF474569Ta11P035F09P017G091F1_060.ab1     1 
  127  C USDA027R_C08_BF474569Ta11P035F09P017G091R1_060.ab1   756 
  131    USDA027F_C08_BF474569Ta11P035F09P017G091F1_060.ab1   131 
  334  C USDA027R_C08_BF474569Ta11P035F09P017G091R1_060.ab1   549 
  342    USDA027F_C08_BF474569Ta11P035F09P017G091F1_060.ab1   342 
  374  C USDA027R_C08_BF474569Ta11P035F09P017G091R1_060.ab1   509 
  402    USDA027F_C08_BF474569Ta11P035F09P017G091F1_060.ab1   402 
  418  C USDA027R_C08_BF474569Ta11P035F09P017G091R1_060.ab1   465 
  434    USDA027F_C08_BF474569Ta11P035F09P017G091F1_060.ab1   434 
  438  C USDA027R_C08_BF474569Ta11P035F09P017G091R1_060.ab1   445 
  442    USDA027F_C08_BF474569Ta11P035F09P017G091F1_060.ab1   442 
  462  C USDA027R_C08_BF474569Ta11P035F09P017G091R1_060.ab1   421 
  474    USDA027F_C08_BF474569Ta11P035F09P017G091F1_060.ab1   474 
  478  C USDA027R_C08_BF474569Ta11P035F09P017G091R1_060.ab1   405 
  494    USDA027F_C08_BF474569Ta11P035F09P017G091F1_060.ab1   494 
  498  C USDA027R_C08_BF474569Ta11P035F09P017G091R1_060.ab1   385 
Contig length: old 882, new 882

Contig length: old 882, new 882
New start: 0