No. words: 1561; after pruning: 1535


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.3 (1,1:733)  731  0.00 0.00 0.00  USDA023F_C08_BF474569Ta11P043A11P017G091F1_060.ab1        1   734 (42)  C USDA023R_C08_BF474569Ta11P043A11P017G091R1_060.ab1   (51)   734     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  368 nodes

 186 str. conn. components

Path
    1  C USDA023R_C08_BF474569Ta11P043A11P017G091R1_060.ab1   785 
   55    USDA023F_C08_BF474569Ta11P043A11P017G091F1_060.ab1     4 
   67  C USDA023R_C08_BF474569Ta11P043A11P017G091R1_060.ab1   719 
   71    USDA023F_C08_BF474569Ta11P043A11P017G091F1_060.ab1    20 
  151  C USDA023R_C08_BF474569Ta11P043A11P017G091R1_060.ab1   635 
  155    USDA023F_C08_BF474569Ta11P043A11P017G091F1_060.ab1   104 
  239  C USDA023R_C08_BF474569Ta11P043A11P017G091R1_060.ab1   547 
  251    USDA023F_C08_BF474569Ta11P043A11P017G091F1_060.ab1   200 
  395  C USDA023R_C08_BF474569Ta11P043A11P017G091R1_060.ab1   391 
  415    USDA023F_C08_BF474569Ta11P043A11P017G091F1_060.ab1   364 
  455  C USDA023R_C08_BF474569Ta11P043A11P017G091R1_060.ab1   331 
  575    USDA023F_C08_BF474569Ta11P043A11P017G091F1_060.ab1   524 
  587  C USDA023R_C08_BF474569Ta11P043A11P017G091R1_060.ab1   199 
  639    USDA023F_C08_BF474569Ta11P043A11P017G091F1_060.ab1   588 
  643  C USDA023R_C08_BF474569Ta11P043A11P017G091R1_060.ab1   143 
  771    USDA023F_C08_BF474569Ta11P043A11P017G091F1_060.ab1   720 
  775  C USDA023R_C08_BF474569Ta11P043A11P017G091R1_060.ab1    11 
  779    USDA023F_C08_BF474569Ta11P043A11P017G091F1_060.ab1   728 
Contig length: old 827, new 827

Contig length: old 827, new 827
New start: 0