No. words: 1430; after pruning: 1404


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:880)  544  0.00 0.00 0.00  USDA027F_D08_BF474569Ta12P035F09P017G091F1_058.ab1      196   744 (0)  C USDA027R_D08_BF474569Ta12P035F09P017G091R1_058.ab1   (0)   686   138 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1    USDA027F_D08_BF474569Ta12P035F09P017G091F1_058.ab1     1 
  383  C USDA027R_D08_BF474569Ta12P035F09P017G091R1_058.ab1   499 
  387    USDA027F_D08_BF474569Ta12P035F09P017G091F1_058.ab1   387 
  419  C USDA027R_D08_BF474569Ta12P035F09P017G091R1_058.ab1   463 
  427    USDA027F_D08_BF474569Ta12P035F09P017G091F1_058.ab1   427 
  479  C USDA027R_D08_BF474569Ta12P035F09P017G091R1_058.ab1   403 
  483    USDA027F_D08_BF474569Ta12P035F09P017G091F1_058.ab1   483 
  487  C USDA027R_D08_BF474569Ta12P035F09P017G091R1_058.ab1   395 
  491    USDA027F_D08_BF474569Ta12P035F09P017G091F1_058.ab1   491 
  499  C USDA027R_D08_BF474569Ta12P035F09P017G091R1_058.ab1   383 
  511    USDA027F_D08_BF474569Ta12P035F09P017G091F1_058.ab1   511 
  519  C USDA027R_D08_BF474569Ta12P035F09P017G091R1_058.ab1   363 
  531    USDA027F_D08_BF474569Ta12P035F09P017G091F1_058.ab1   531 
  547  C USDA027R_D08_BF474569Ta12P035F09P017G091R1_058.ab1   335 
  591    USDA027F_D08_BF474569Ta12P035F09P017G091F1_058.ab1   591 
  603  C USDA027R_D08_BF474569Ta12P035F09P017G091R1_058.ab1   279 
Contig length: old 881, new 881

Contig length: old 881, new 881
New start: 0