No. words: 1570; after pruning: 1544


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.5 (1,1:746)  740  0.00 0.13 0.00  USDA023F_D08_BF474569Ta12P043A11P017G091F1_058.ab1        1   747 (44)  C USDA023R_D08_BF474569Ta12P043A11P017G091R1_058.ab1   (31)   748     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1  C USDA023R_D08_BF474569Ta12P043A11P017G091R1_058.ab1   779 
   49    USDA023F_D08_BF474569Ta12P043A11P017G091F1_058.ab1    17 
   81  C USDA023R_D08_BF474569Ta12P043A11P017G091R1_058.ab1   699 
   85    USDA023F_D08_BF474569Ta12P043A11P017G091F1_058.ab1    53 
  145  C USDA023R_D08_BF474569Ta12P043A11P017G091R1_058.ab1   635 
  149    USDA023F_D08_BF474569Ta12P043A11P017G091F1_058.ab1   117 
  237  C USDA023R_D08_BF474569Ta12P043A11P017G091R1_058.ab1   543 
  245    USDA023F_D08_BF474569Ta12P043A11P017G091F1_058.ab1   213 
  277  C USDA023R_D08_BF474569Ta12P043A11P017G091R1_058.ab1   503 
  289    USDA023F_D08_BF474569Ta12P043A11P017G091F1_058.ab1   257 
  389  C USDA023R_D08_BF474569Ta12P043A11P017G091R1_058.ab1   391 
  413    USDA023F_D08_BF474569Ta12P043A11P017G091F1_058.ab1   381 
  621  C USDA023R_D08_BF474569Ta12P043A11P017G091R1_058.ab1   159 
  629    USDA023F_D08_BF474569Ta12P043A11P017G091F1_058.ab1   597 
  633  C USDA023R_D08_BF474569Ta12P043A11P017G091R1_058.ab1   147 
  641    USDA023F_D08_BF474569Ta12P043A11P017G091F1_058.ab1   609 
  657  C USDA023R_D08_BF474569Ta12P043A11P017G091R1_058.ab1   123 
  757    USDA023F_D08_BF474569Ta12P043A11P017G091F1_058.ab1   725 
Contig length: old 823, new 823

Contig length: old 823, new 823
New start: 0