No. words: 1590; after pruning: 1564


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.7 (1,1:880)  690  0.71 0.00 0.00  USDA027F_E08_BF474569Ta13P035F09P017G091F1_056.ab1       50   758 (0)  C USDA027R_E08_BF474569Ta13P035F09P017G091R1_056.ab1   (0)   832   124 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  344 nodes

 174 str. conn. components

Path
    1    USDA027F_E08_BF474569Ta13P035F09P017G091F1_056.ab1     1 
  309  C USDA027R_E08_BF474569Ta13P035F09P017G091R1_056.ab1   573 
  313    USDA027F_E08_BF474569Ta13P035F09P017G091F1_056.ab1   313 
  373  C USDA027R_E08_BF474569Ta13P035F09P017G091R1_056.ab1   509 
  377    USDA027F_E08_BF474569Ta13P035F09P017G091F1_056.ab1   377 
  389  C USDA027R_E08_BF474569Ta13P035F09P017G091R1_056.ab1   493 
  401    USDA027F_E08_BF474569Ta13P035F09P017G091F1_056.ab1   401 
  417  C USDA027R_E08_BF474569Ta13P035F09P017G091R1_056.ab1   465 
  429    USDA027F_E08_BF474569Ta13P035F09P017G091F1_056.ab1   429 
  445  C USDA027R_E08_BF474569Ta13P035F09P017G091R1_056.ab1   437 
  453    USDA027F_E08_BF474569Ta13P035F09P017G091F1_056.ab1   453 
  457  C USDA027R_E08_BF474569Ta13P035F09P017G091R1_056.ab1   425 
  537    USDA027F_E08_BF474569Ta13P035F09P017G091F1_056.ab1   537 
  541  C USDA027R_E08_BF474569Ta13P035F09P017G091R1_056.ab1   341 
Contig length: old 881, new 881

Contig length: old 881, new 881
New start: 0