No. words: 1569; after pruning: 1543


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.5 (1,1:746)  740  0.00 0.13 0.00  USDA023F_F08_BF474569Ta14P043A11P017G091F1_054.ab1        1   747 (40)  C USDA023R_F08_BF474569Ta14P043A11P017G091R1_054.ab1   (34)   748     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1  C USDA023R_F08_BF474569Ta14P043A11P017G091R1_054.ab1   782 
   50    USDA023F_F08_BF474569Ta14P043A11P017G091F1_054.ab1    15 
   62  C USDA023R_F08_BF474569Ta14P043A11P017G091R1_054.ab1   721 
   66    USDA023F_F08_BF474569Ta14P043A11P017G091F1_054.ab1    31 
  114  C USDA023R_F08_BF474569Ta14P043A11P017G091R1_054.ab1   669 
  122    USDA023F_F08_BF474569Ta14P043A11P017G091F1_054.ab1    87 
  222  C USDA023R_F08_BF474569Ta14P043A11P017G091R1_054.ab1   561 
  290    USDA023F_F08_BF474569Ta14P043A11P017G091F1_054.ab1   255 
  298  C USDA023R_F08_BF474569Ta14P043A11P017G091R1_054.ab1   485 
  310    USDA023F_F08_BF474569Ta14P043A11P017G091F1_054.ab1   275 
  378  C USDA023R_F08_BF474569Ta14P043A11P017G091R1_054.ab1   405 
  578    USDA023F_F08_BF474569Ta14P043A11P017G091F1_054.ab1   543 
  598  C USDA023R_F08_BF474569Ta14P043A11P017G091R1_054.ab1   185 
  778    USDA023F_F08_BF474569Ta14P043A11P017G091F1_054.ab1   743 
Contig length: old 822, new 822

Contig length: old 822, new 822
New start: 0