No. words: 1537; after pruning: 1511


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:881)  635  0.76 0.00 0.00  USDA027F_G08_BF474569Ta15P035F09P017G091F1_052.ab1       32   686 (0)  C USDA027R_G08_BF474569Ta15P035F09P017G091R1_052.ab1   (0)   851   197 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1    USDA027F_G08_BF474569Ta15P035F09P017G091F1_052.ab1     1 
  301  C USDA027R_G08_BF474569Ta15P035F09P017G091R1_052.ab1   582 
  313    USDA027F_G08_BF474569Ta15P035F09P017G091F1_052.ab1   313 
  325  C USDA027R_G08_BF474569Ta15P035F09P017G091R1_052.ab1   558 
  329    USDA027F_G08_BF474569Ta15P035F09P017G091F1_052.ab1   329 
  349  C USDA027R_G08_BF474569Ta15P035F09P017G091R1_052.ab1   534 
  357    USDA027F_G08_BF474569Ta15P035F09P017G091F1_052.ab1   357 
  373  C USDA027R_G08_BF474569Ta15P035F09P017G091R1_052.ab1   510 
Contig length: old 882, new 882

Contig length: old 882, new 882
New start: 0