No. words: 1461; after pruning: 1407


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.6 (1,1:1197)  253  0.76 0.00 0.00  USDA027F_E10_BF474569Ta15P035H09P017G091F1_072.ab1      415   677 (0)  C USDA027R_E10_BF474569Ta15P035H09P017G091R1_072.ab1   (0)   784   522 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  126 nodes

 65 str. conn. components

Path
    1    USDA027F_E10_BF474569Ta15P035H09P017G091F1_072.ab1     1 
  585  C USDA027R_E10_BF474569Ta15P035H09P017G091R1_072.ab1   614 
  589    USDA027F_E10_BF474569Ta15P035H09P017G091F1_072.ab1   589 
  625  C USDA027R_E10_BF474569Ta15P035H09P017G091R1_072.ab1   574 
  637    USDA027F_E10_BF474569Ta15P035H09P017G091F1_072.ab1   637 
  641  C USDA027R_E10_BF474569Ta15P035H09P017G091R1_072.ab1   558 
Contig length: old 1198, new 1198

Contig length: old 1198, new 1198
New start: 0 
S Change at: 275; seg lengths: entry 1, contig 1
S Change at: 408; seg lengths: entry 1, contig 1