No. words: 1566; after pruning: 1540


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.3 (1,1:733)  731  0.00 0.00 0.00  USDA023F_G08_BF474569Ta15P043A11P017G091F1_052.ab1        1   734 (48)  C USDA023R_G08_BF474569Ta15P043A11P017G091R1_052.ab1   (50)   734     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  368 nodes

 186 str. conn. components

Path
    1  C USDA023R_G08_BF474569Ta15P043A11P017G091R1_052.ab1   784 
   54    USDA023F_G08_BF474569Ta15P043A11P017G091F1_052.ab1     4 
  118  C USDA023R_G08_BF474569Ta15P043A11P017G091R1_052.ab1   667 
  122    USDA023F_G08_BF474569Ta15P043A11P017G091F1_052.ab1    72 
  226  C USDA023R_G08_BF474569Ta15P043A11P017G091R1_052.ab1   559 
  242    USDA023F_G08_BF474569Ta15P043A11P017G091F1_052.ab1   192 
  298  C USDA023R_G08_BF474569Ta15P043A11P017G091R1_052.ab1   487 
  310    USDA023F_G08_BF474569Ta15P043A11P017G091F1_052.ab1   260 
  330  C USDA023R_G08_BF474569Ta15P043A11P017G091R1_052.ab1   455 
  334    USDA023F_G08_BF474569Ta15P043A11P017G091F1_052.ab1   284 
  362  C USDA023R_G08_BF474569Ta15P043A11P017G091R1_052.ab1   423 
  366    USDA023F_G08_BF474569Ta15P043A11P017G091F1_052.ab1   316 
  394  C USDA023R_G08_BF474569Ta15P043A11P017G091R1_052.ab1   391 
  414    USDA023F_G08_BF474569Ta15P043A11P017G091F1_052.ab1   364 
  422  C USDA023R_G08_BF474569Ta15P043A11P017G091R1_052.ab1   363 
  778    USDA023F_G08_BF474569Ta15P043A11P017G091F1_052.ab1   728 
Contig length: old 832, new 832

Contig length: old 832, new 832
New start: 0