No. words: 2885; after pruning: 2833


Histogram of relative pair offsets, for read pairs with multiple alignments:
28     2
39     2
40     2
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.7 (1,1:865)  719  0.14 0.14 0.00  USDA027F_H08_BF474569Ta16P035H09P017G091F1_050.ab1       66   797 (0)  C USDA027R_H08_BF474569Ta16P035H09P017G091R1_050.ab1   (0)   802    70 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    
Merge:(0)    0    0.0 0.3 (1,1:1207)   63  5.13 0.00 0.00  USDA027F_F10_BF474569Ta16P035H09P017G091F1_070.ab1      490   567 (0)  C USDA027R_F10_BF474569Ta16P035H09P017G091R1_070.ab1   (0)   719   642 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  362 nodes

 183 str. conn. components

Path
    1    USDA027F_H08_BF474569Ta16P035H09P017G091F1_050.ab1     1 
  388  C USDA027R_H08_BF474569Ta16P035H09P017G091R1_050.ab1   479 
  392    USDA027F_H08_BF474569Ta16P035H09P017G091F1_050.ab1   392 
  440  C USDA027R_H08_BF474569Ta16P035H09P017G091R1_050.ab1   427 
  444    USDA027F_H08_BF474569Ta16P035H09P017G091F1_050.ab1   444 
  484  C USDA027R_H08_BF474569Ta16P035H09P017G091R1_050.ab1   383 
  492    USDA027F_H08_BF474569Ta16P035H09P017G091F1_050.ab1   492 
  516  C USDA027R_H08_BF474569Ta16P035H09P017G091R1_050.ab1   351 
  524    USDA027F_H08_BF474569Ta16P035H09P017G091F1_050.ab1   524 
  532  C USDA027R_H08_BF474569Ta16P035H09P017G091R1_050.ab1   335 
  777    USDA027F_H08_BF474569Ta16P035H09P017G091F1_050.ab1   777 
  781  C USDA027R_H08_BF474569Ta16P035H09P017G091R1_050.ab1    86 
Contig length: old 866, new 866

Contig 1:  26 nodes

 15 str. conn. components

Path
    1    USDA027F_F10_BF474569Ta16P035H09P017G091F1_070.ab1     1 
  499  C USDA027R_F10_BF474569Ta16P035H09P017G091R1_070.ab1   710 
  512    USDA027F_F10_BF474569Ta16P035H09P017G091F1_070.ab1   512 
  516  C USDA027R_F10_BF474569Ta16P035H09P017G091R1_070.ab1   693 
Contig length: old 1208, new 1208

Contig length: old 866, new 866
New start: 0 

Contig length: old 1208, new 1208
New start: 0 
S Change at: 521; seg lengths: entry 1, contig 1