No. words: 1454; after pruning: 1414


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.5 (1,1:1192)  247  0.77 0.00 0.00  USDA027F_G10_BF474569Ta17P035H09P017G091F1_068.ab1      519   779 (0)  C USDA027R_G10_BF474569Ta17P035H09P017G091R1_068.ab1   (0)   675   415 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  126 nodes

 65 str. conn. components

Path
    1    USDA027F_G10_BF474569Ta17P035H09P017G091F1_068.ab1     1 
  626  C USDA027R_G10_BF474569Ta17P035H09P017G091R1_068.ab1   568 
  634    USDA027F_G10_BF474569Ta17P035H09P017G091F1_068.ab1   634 
  646  C USDA027R_G10_BF474569Ta17P035H09P017G091R1_068.ab1   548 
  678    USDA027F_G10_BF474569Ta17P035H09P017G091F1_068.ab1   678 
  694  C USDA027R_G10_BF474569Ta17P035H09P017G091R1_068.ab1   500 
  702    USDA027F_G10_BF474569Ta17P035H09P017G091F1_068.ab1   702 
  706  C USDA027R_G10_BF474569Ta17P035H09P017G091R1_068.ab1   488 
  722    USDA027F_G10_BF474569Ta17P035H09P017G091F1_068.ab1   722 
  726  C USDA027R_G10_BF474569Ta17P035H09P017G091R1_068.ab1   468 
Contig length: old 1193, new 1193

Contig length: old 1193, new 1193
New start: 0 
S Change at: 269; seg lengths: entry 1, contig 1