No. words: 1561; after pruning: 1535


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.3 (1,1:731)  729  0.00 0.00 0.00  USDA023F_A09_BF474569Ta17P043A11P017G091F1_079.ab1        1   732 (47)  C USDA023R_A09_BF474569Ta17P043A11P017G091R1_079.ab1   (50)   732     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  368 nodes

 186 str. conn. components

Path
    1  C USDA023R_A09_BF474569Ta17P043A11P017G091R1_079.ab1   782 
   58    USDA023F_A09_BF474569Ta17P043A11P017G091F1_079.ab1     8 
  102  C USDA023R_A09_BF474569Ta17P043A11P017G091R1_079.ab1   681 
  106    USDA023F_A09_BF474569Ta17P043A11P017G091F1_079.ab1    56 
  126  C USDA023R_A09_BF474569Ta17P043A11P017G091R1_079.ab1   657 
  134    USDA023F_A09_BF474569Ta17P043A11P017G091F1_079.ab1    84 
  146  C USDA023R_A09_BF474569Ta17P043A11P017G091R1_079.ab1   637 
  154    USDA023F_A09_BF474569Ta17P043A11P017G091F1_079.ab1   104 
  194  C USDA023R_A09_BF474569Ta17P043A11P017G091R1_079.ab1   589 
  198    USDA023F_A09_BF474569Ta17P043A11P017G091F1_079.ab1   148 
  234  C USDA023R_A09_BF474569Ta17P043A11P017G091R1_079.ab1   549 
  242    USDA023F_A09_BF474569Ta17P043A11P017G091F1_079.ab1   192 
  426  C USDA023R_A09_BF474569Ta17P043A11P017G091R1_079.ab1   357 
  582    USDA023F_A09_BF474569Ta17P043A11P017G091F1_079.ab1   532 
  586  C USDA023R_A09_BF474569Ta17P043A11P017G091R1_079.ab1   197 
  758    USDA023F_A09_BF474569Ta17P043A11P017G091F1_079.ab1   708 
  770  C USDA023R_A09_BF474569Ta17P043A11P017G091R1_079.ab1    13 
  778    USDA023F_A09_BF474569Ta17P043A11P017G091F1_079.ab1   728 
Contig length: old 829, new 829

Contig length: old 829, new 829
New start: 0