No. words: 1501; after pruning: 1461


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:874)  618  0.32 0.00 0.00  USDA027F_B09_BF474569Ta18P035F09P017G091F1_077.ab1       66   691 (0)  C USDA027R_B09_BF474569Ta18P035F09P017G091R1_077.ab1   (0)   810   185 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1    USDA027F_B09_BF474569Ta18P035F09P017G091F1_077.ab1     1 
  308  C USDA027R_B09_BF474569Ta18P035F09P017G091R1_077.ab1   568 
  312    USDA027F_B09_BF474569Ta18P035F09P017G091F1_077.ab1   312 
  352  C USDA027R_B09_BF474569Ta18P035F09P017G091R1_077.ab1   524 
  356    USDA027F_B09_BF474569Ta18P035F09P017G091F1_077.ab1   356 
  372  C USDA027R_B09_BF474569Ta18P035F09P017G091R1_077.ab1   504 
  380    USDA027F_B09_BF474569Ta18P035F09P017G091F1_077.ab1   380 
  384  C USDA027R_B09_BF474569Ta18P035F09P017G091R1_077.ab1   492 
  396    USDA027F_B09_BF474569Ta18P035F09P017G091F1_077.ab1   396 
  400  C USDA027R_B09_BF474569Ta18P035F09P017G091R1_077.ab1   476 
  404    USDA027F_B09_BF474569Ta18P035F09P017G091F1_077.ab1   404 
  416  C USDA027R_B09_BF474569Ta18P035F09P017G091R1_077.ab1   460 
  444    USDA027F_B09_BF474569Ta18P035F09P017G091F1_077.ab1   444 
  452  C USDA027R_B09_BF474569Ta18P035F09P017G091R1_077.ab1   424 
  472    USDA027F_B09_BF474569Ta18P035F09P017G091F1_077.ab1   472 
  480  C USDA027R_B09_BF474569Ta18P035F09P017G091R1_077.ab1   396 
Contig length: old 875, new 875

Contig length: old 875, new 875
New start: 0