No. words: 1524; after pruning: 1498


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.9 (1,1:731)  720  0.41 0.00 0.00  USDA023F_B09_BF474569Ta18P043A11P017G091F1_077.ab1        1   732 (40)  C USDA023R_B09_BF474569Ta18P043A11P017G091R1_077.ab1   (20)   732     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  360 nodes

 182 str. conn. components

Path
    1  C USDA023R_B09_BF474569Ta18P043A11P017G091R1_077.ab1   752 
   24    USDA023F_B09_BF474569Ta18P043A11P017G091F1_077.ab1     4 
   32  C USDA023R_B09_BF474569Ta18P043A11P017G091R1_077.ab1   721 
   61    USDA023F_B09_BF474569Ta18P043A11P017G091F1_077.ab1    41 
   69  C USDA023R_B09_BF474569Ta18P043A11P017G091R1_077.ab1   684 
   77    USDA023F_B09_BF474569Ta18P043A11P017G091F1_077.ab1    57 
   89  C USDA023R_B09_BF474569Ta18P043A11P017G091R1_077.ab1   664 
  112    USDA023F_B09_BF474569Ta18P043A11P017G091F1_077.ab1    92 
  120  C USDA023R_B09_BF474569Ta18P043A11P017G091R1_077.ab1   633 
  124    USDA023F_B09_BF474569Ta18P043A11P017G091F1_077.ab1   104 
  168  C USDA023R_B09_BF474569Ta18P043A11P017G091R1_077.ab1   585 
  312    USDA023F_B09_BF474569Ta18P043A11P017G091F1_077.ab1   292 
  400  C USDA023R_B09_BF474569Ta18P043A11P017G091R1_077.ab1   353 
  524    USDA023F_B09_BF474569Ta18P043A11P017G091F1_077.ab1   504 
  576  C USDA023R_B09_BF474569Ta18P043A11P017G091R1_077.ab1   177 
  600    USDA023F_B09_BF474569Ta18P043A11P017G091F1_077.ab1   580 
  620  C USDA023R_B09_BF474569Ta18P043A11P017G091R1_077.ab1   133 
  624    USDA023F_B09_BF474569Ta18P043A11P017G091F1_077.ab1   604 
  632  C USDA023R_B09_BF474569Ta18P043A11P017G091R1_077.ab1   121 
  668    USDA023F_B09_BF474569Ta18P043A11P017G091F1_077.ab1   648 
  672  C USDA023R_B09_BF474569Ta18P043A11P017G091R1_077.ab1    81 
  728    USDA023F_B09_BF474569Ta18P043A11P017G091F1_077.ab1   708 
  732  C USDA023R_B09_BF474569Ta18P043A11P017G091R1_077.ab1    21 
  740    USDA023F_B09_BF474569Ta18P043A11P017G091F1_077.ab1   720 
  744  C USDA023R_B09_BF474569Ta18P043A11P017G091R1_077.ab1     9 
  748    USDA023F_B09_BF474569Ta18P043A11P017G091F1_077.ab1   728 
Contig length: old 792, new 792

Contig length: old 792, new 792
New start: 0