No. words: 1522; after pruning: 1482


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.7 (1,1:1189)  319  0.00 0.30 0.00  USDA027F_A11_BF474569Ta19P035H09P017G091F1_095.ab1      419   749 (0)  C USDA027R_A11_BF474569Ta19P035H09P017G091R1_095.ab1   (0)   773   442 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  164 nodes

 84 str. conn. components

Path
    1    USDA027F_A11_BF474569Ta19P035H09P017G091F1_095.ab1     1 
  563  C USDA027R_A11_BF474569Ta19P035H09P017G091R1_095.ab1   628 
  575    USDA027F_A11_BF474569Ta19P035H09P017G091F1_095.ab1   575 
  583  C USDA027R_A11_BF474569Ta19P035H09P017G091R1_095.ab1   608 
  591    USDA027F_A11_BF474569Ta19P035H09P017G091F1_095.ab1   591 
  607  C USDA027R_A11_BF474569Ta19P035H09P017G091R1_095.ab1   584 
  611    USDA027F_A11_BF474569Ta19P035H09P017G091F1_095.ab1   611 
  619  C USDA027R_A11_BF474569Ta19P035H09P017G091R1_095.ab1   572 
Contig length: old 1190, new 1190

Contig length: old 1190, new 1190
New start: 0 
S Change at: 406; seg lengths: entry 1, contig 1