No. words: 1552; after pruning: 1526


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.4 (1,1:744)  738  0.00 0.13 0.00  USDA023F_C09_BF474569Ta19P043A11P017G091F1_075.ab1        1   745 (48)  C USDA023R_C09_BF474569Ta19P043A11P017G091R1_075.ab1   (13)   746     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  370 nodes

 187 str. conn. components

Path
    1  C USDA023R_C09_BF474569Ta19P043A11P017G091R1_075.ab1   759 
   33    USDA023F_C09_BF474569Ta19P043A11P017G091F1_075.ab1    19 
   41  C USDA023R_C09_BF474569Ta19P043A11P017G091R1_075.ab1   719 
   45    USDA023F_C09_BF474569Ta19P043A11P017G091F1_075.ab1    31 
  125  C USDA023R_C09_BF474569Ta19P043A11P017G091R1_075.ab1   635 
  129    USDA023F_C09_BF474569Ta19P043A11P017G091F1_075.ab1   115 
  385  C USDA023R_C09_BF474569Ta19P043A11P017G091R1_075.ab1   375 
  609    USDA023F_C09_BF474569Ta19P043A11P017G091F1_075.ab1   595 
  625  C USDA023R_C09_BF474569Ta19P043A11P017G091R1_075.ab1   135 
  745    USDA023F_C09_BF474569Ta19P043A11P017G091F1_075.ab1   731 
Contig length: old 807, new 807

Contig length: old 807, new 807
New start: 0