No. words: 1550; after pruning: 1524


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.4 (1,1:744)  738  0.00 0.13 0.00  USDA023F_D09_BF474569Ta20P043A11P017G091F1_073.ab1        1   745 (46)  C USDA023R_D09_BF474569Ta20P043A11P017G091R1_073.ab1   (13)   746     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1  C USDA023R_D09_BF474569Ta20P043A11P017G091R1_073.ab1   759 
   23    USDA023F_D09_BF474569Ta20P043A11P017G091F1_073.ab1     9 
  151  C USDA023R_D09_BF474569Ta20P043A11P017G091R1_073.ab1   609 
  155    USDA023F_D09_BF474569Ta20P043A11P017G091F1_073.ab1   141 
  387  C USDA023R_D09_BF474569Ta20P043A11P017G091R1_073.ab1   373 
  555    USDA023F_D09_BF474569Ta20P043A11P017G091F1_073.ab1   541 
  603  C USDA023R_D09_BF474569Ta20P043A11P017G091R1_073.ab1   157 
  611    USDA023F_D09_BF474569Ta20P043A11P017G091F1_073.ab1   597 
  631  C USDA023R_D09_BF474569Ta20P043A11P017G091R1_073.ab1   129 
  691    USDA023F_D09_BF474569Ta20P043A11P017G091F1_073.ab1   677 
  695  C USDA023R_D09_BF474569Ta20P043A11P017G091R1_073.ab1    65 
  747    USDA023F_D09_BF474569Ta20P043A11P017G091F1_073.ab1   733 
Contig length: old 805, new 805

Contig length: old 805, new 805
New start: 0