No. words: 1098; after pruning: 1058


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.0 (1,1:609)  390  1.23 0.00 0.00  USDA027F_E09_BF474569Ta21P035F09P017G091F1_071.ab1        1   406 (0)  C USDA027R_E09_BF474569Ta21P035F09P017G091R1_071.ab1   (82)   610   205 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  194 nodes

 99 str. conn. components

Path
    1  C USDA027R_E09_BF474569Ta21P035F09P017G091R1_071.ab1   692 
   86    USDA027F_E09_BF474569Ta21P035F09P017G091F1_071.ab1     4 
  247  C USDA027R_E09_BF474569Ta21P035F09P017G091R1_071.ab1   446 
  251    USDA027F_E09_BF474569Ta21P035F09P017G091F1_071.ab1   169 
  259  C USDA027R_E09_BF474569Ta21P035F09P017G091R1_071.ab1   434 
  263    USDA027F_E09_BF474569Ta21P035F09P017G091F1_071.ab1   181 
  271  C USDA027R_E09_BF474569Ta21P035F09P017G091R1_071.ab1   422 
  275    USDA027F_E09_BF474569Ta21P035F09P017G091F1_071.ab1   193 
  283  C USDA027R_E09_BF474569Ta21P035F09P017G091R1_071.ab1   410 
  307    USDA027F_E09_BF474569Ta21P035F09P017G091F1_071.ab1   225 
  311  C USDA027R_E09_BF474569Ta21P035F09P017G091R1_071.ab1   382 
  315    USDA027F_E09_BF474569Ta21P035F09P017G091F1_071.ab1   233 
  319  C USDA027R_E09_BF474569Ta21P035F09P017G091R1_071.ab1   374 
  335    USDA027F_E09_BF474569Ta21P035F09P017G091F1_071.ab1   253 
  339  C USDA027R_E09_BF474569Ta21P035F09P017G091R1_071.ab1   354 
Contig length: old 692, new 692

Contig length: old 692, new 692
New start: 0