No. words: 1535; after pruning: 1509


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.3 (1,1:733)  731  0.00 0.00 0.00  USDA023F_F09_BF474569Ta22P043A11P017G091F1_069.ab1        1   734 (40)  C USDA023R_F09_BF474569Ta22P043A11P017G091R1_069.ab1   (27)   734     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  368 nodes

 186 str. conn. components

Path
    1  C USDA023R_F09_BF474569Ta22P043A11P017G091R1_069.ab1   761 
   35    USDA023F_F09_BF474569Ta22P043A11P017G091F1_069.ab1     8 
   63  C USDA023R_F09_BF474569Ta22P043A11P017G091R1_069.ab1   699 
   67    USDA023F_F09_BF474569Ta22P043A11P017G091F1_069.ab1    40 
   95  C USDA023R_F09_BF474569Ta22P043A11P017G091R1_069.ab1   667 
   99    USDA023F_F09_BF474569Ta22P043A11P017G091F1_069.ab1    72 
  123  C USDA023R_F09_BF474569Ta22P043A11P017G091R1_069.ab1   639 
  131    USDA023F_F09_BF474569Ta22P043A11P017G091F1_069.ab1   104 
  215  C USDA023R_F09_BF474569Ta22P043A11P017G091R1_069.ab1   547 
  247    USDA023F_F09_BF474569Ta22P043A11P017G091F1_069.ab1   220 
  307  C USDA023R_F09_BF474569Ta22P043A11P017G091R1_069.ab1   455 
  323    USDA023F_F09_BF474569Ta22P043A11P017G091F1_069.ab1   296 
  375  C USDA023R_F09_BF474569Ta22P043A11P017G091R1_069.ab1   387 
  391    USDA023F_F09_BF474569Ta22P043A11P017G091F1_069.ab1   364 
  399  C USDA023R_F09_BF474569Ta22P043A11P017G091R1_069.ab1   363 
  611    USDA023F_F09_BF474569Ta22P043A11P017G091F1_069.ab1   584 
  615  C USDA023R_F09_BF474569Ta22P043A11P017G091R1_069.ab1   147 
  755    USDA023F_F09_BF474569Ta22P043A11P017G091F1_069.ab1   728 
Contig length: old 801, new 801

Contig length: old 801, new 801
New start: 0