No. words: 1391; after pruning: 1351


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.6 (1,1:1195)  181  1.54 0.00 0.00  USDA027F_E11_BF474569Ta23P035H09P017G091F1_087.ab1      477   671 (0)  C USDA027R_E11_BF474569Ta23P035H09P017G091R1_087.ab1   (0)   720   526 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  88 nodes

 46 str. conn. components

Path
    1    USDA027F_E11_BF474569Ta23P035H09P017G091F1_087.ab1     1 
  573  C USDA027R_E11_BF474569Ta23P035H09P017G091R1_087.ab1   624 
  577    USDA027F_E11_BF474569Ta23P035H09P017G091F1_087.ab1   577 
  581  C USDA027R_E11_BF474569Ta23P035H09P017G091R1_087.ab1   616 
  585    USDA027F_E11_BF474569Ta23P035H09P017G091F1_087.ab1   585 
  617  C USDA027R_E11_BF474569Ta23P035H09P017G091R1_087.ab1   580 
Contig length: old 1196, new 1196

Contig length: old 1196, new 1196
New start: 0 
S Change at: 267; seg lengths: entry 1, contig 1