No. words: 1563; after pruning: 1537


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 15.5 (1,1:740)  736  0.00 0.00 0.00  USDA023F_G09_BF474569Ta23P043A11P017G091F1_067.ab1        1   739 (39)  C USDA023R_G09_BF474569Ta23P043A11P017G091R1_067.ab1   (44)   741     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1  C USDA023R_G09_BF474569Ta23P043A11P017G091R1_067.ab1   785 
   56    USDA023F_G09_BF474569Ta23P043A11P017G091F1_067.ab1    12 
   84  C USDA023R_G09_BF474569Ta23P043A11P017G091R1_067.ab1   702 
   88    USDA023F_G09_BF474569Ta23P043A11P017G091F1_067.ab1    44 
  148  C USDA023R_G09_BF474569Ta23P043A11P017G091R1_067.ab1   638 
  152    USDA023F_G09_BF474569Ta23P043A11P017G091F1_067.ab1   108 
  236  C USDA023R_G09_BF474569Ta23P043A11P017G091R1_067.ab1   550 
  252    USDA023F_G09_BF474569Ta23P043A11P017G091F1_067.ab1   208 
  300  C USDA023R_G09_BF474569Ta23P043A11P017G091R1_067.ab1   486 
  312    USDA023F_G09_BF474569Ta23P043A11P017G091F1_067.ab1   268 
  396  C USDA023R_G09_BF474569Ta23P043A11P017G091R1_067.ab1   390 
  404    USDA023F_G09_BF474569Ta23P043A11P017G091F1_067.ab1   360 
  412  C USDA023R_G09_BF474569Ta23P043A11P017G091R1_067.ab1   374 
  416    USDA023F_G09_BF474569Ta23P043A11P017G091F1_067.ab1   372 
  464  C USDA023R_G09_BF474569Ta23P043A11P017G091R1_067.ab1   322 
  632    USDA023F_G09_BF474569Ta23P043A11P017G091F1_067.ab1   588 
  652  C USDA023R_G09_BF474569Ta23P043A11P017G091R1_067.ab1   134 
  780    USDA023F_G09_BF474569Ta23P043A11P017G091F1_067.ab1   736 
Contig length: old 822, new 822

Contig length: old 822, new 822
New start: 0