No. words: 1506; after pruning: 1480


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.8 (1,1:878)  601  0.64 0.00 0.16  USDA027F_H09_BF474569Ta24P035F09P017G091F1_065.ab1      161   787 (0)  C USDA027R_H09_BF474569Ta24P035F09P017G091R1_065.ab1   (0)   719    94 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1    USDA027F_H09_BF474569Ta24P035F09P017G091F1_065.ab1     1 
  299  C USDA027R_H09_BF474569Ta24P035F09P017G091R1_065.ab1   581 
  307    USDA027F_H09_BF474569Ta24P035F09P017G091F1_065.ab1   307 
  375  C USDA027R_H09_BF474569Ta24P035F09P017G091R1_065.ab1   505 
  383    USDA027F_H09_BF474569Ta24P035F09P017G091F1_065.ab1   383 
  451  C USDA027R_H09_BF474569Ta24P035F09P017G091R1_065.ab1   429 
  467    USDA027F_H09_BF474569Ta24P035F09P017G091F1_065.ab1   467 
  491  C USDA027R_H09_BF474569Ta24P035F09P017G091R1_065.ab1   389 
  495    USDA027F_H09_BF474569Ta24P035F09P017G091F1_065.ab1   495 
  499  C USDA027R_H09_BF474569Ta24P035F09P017G091R1_065.ab1   381 
Contig length: old 879, new 879

Contig length: old 879, new 879
New start: 0