No. words: 1802; after pruning: 1747


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 17.7 (1,1:896)  862  0.45 0.22 0.11  USDA027F_A07_BF474569Td01P035F09P017G091F1_063.ab1        3   891 (12)  C USDA027R_A07_BF474569Td01P035F09P017G091R1_063.ab1   (3)   896     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  428 nodes

 216 str. conn. components

Path
    1  C USDA027R_A07_BF474569Td01P035F09P017G091R1_063.ab1   899 
   18    USDA027F_A07_BF474569Td01P035F09P017G091F1_063.ab1    16 
   28  C USDA027R_A07_BF474569Td01P035F09P017G091R1_063.ab1   871 
   32    USDA027F_A07_BF474569Td01P035F09P017G091F1_063.ab1    30 
  354  C USDA027R_A07_BF474569Td01P035F09P017G091R1_063.ab1   545 
  362    USDA027F_A07_BF474569Td01P035F09P017G091F1_063.ab1   360 
  398  C USDA027R_A07_BF474569Td01P035F09P017G091R1_063.ab1   501 
  410    USDA027F_A07_BF474569Td01P035F09P017G091F1_063.ab1   408 
  538  C USDA027R_A07_BF474569Td01P035F09P017G091R1_063.ab1   361 
  546    USDA027F_A07_BF474569Td01P035F09P017G091F1_063.ab1   544 
  578  C USDA027R_A07_BF474569Td01P035F09P017G091R1_063.ab1   321 
  594    USDA027F_A07_BF474569Td01P035F09P017G091F1_063.ab1   592 
  614  C USDA027R_A07_BF474569Td01P035F09P017G091R1_063.ab1   285 
  879    USDA027F_A07_BF474569Td01P035F09P017G091F1_063.ab1   877 
Contig length: old 905, new 905

Contig length: old 905, new 905
New start: 0