No. words: 1575; after pruning: 1549


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.3 (1,1:754)  736  0.27 0.13 0.00  USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1        4   752 (37)  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1   (34)   752     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  366 nodes

 185 str. conn. components

Path
    1  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1   786 
   57    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1    25 
   65  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1   722 
   69    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1    37 
   85  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1   702 
   89    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1    57 
  129  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1   658 
  165    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1   133 
  185  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1   602 
  189    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1   157 
  237  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1   550 
  277    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1   245 
  281  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1   506 
  313    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1   281 
  325  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1   462 
  337    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1   305 
  345  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1   442 
  349    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1   317 
  381  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1   406 
  389    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1   357 
  393  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1   394 
  417    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1   385 
  425  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1   362 
  433    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1   401 
  449  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1   338 
  537    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1   505 
  541  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1   246 
  581    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1   549 
  589  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1   198 
  597    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1   565 
  601  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1   186 
  661    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1   629 
  665  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1   122 
  701    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1   669 
  709  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1    78 
  741    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1   709 
  754  C USDA023R_A07_BF474569Td01P043A11P017G091R1_063.ab1    33 
  778    USDA023F_A07_BF474569Td01P043A11P017G091F1_063.ab1   746 
Contig length: old 820, new 821

Contig length: old 821, new 821
New start: 0