No. words: 1729; after pruning: 1689


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.4 (1,1:899)  788  0.25 0.37 0.00  USDA027F_B07_BF474569Td02P035F09P017G091F1_061.ab1        1   813 (0)  C USDA027R_B07_BF474569Td02P035F09P017G091R1_061.ab1   (14)   902    87 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  396 nodes

 200 str. conn. components

Path
    1  C USDA027R_B07_BF474569Td02P035F09P017G091R1_061.ab1   916 
   29    USDA027F_B07_BF474569Td02P035F09P017G091F1_061.ab1    14 
  334  C USDA027R_B07_BF474569Td02P035F09P017G091R1_061.ab1   581 
  346    USDA027F_B07_BF474569Td02P035F09P017G091F1_061.ab1   331 
  358  C USDA027R_B07_BF474569Td02P035F09P017G091R1_061.ab1   557 
  366    USDA027F_B07_BF474569Td02P035F09P017G091F1_061.ab1   351 
  386  C USDA027R_B07_BF474569Td02P035F09P017G091R1_061.ab1   529 
  394    USDA027F_B07_BF474569Td02P035F09P017G091F1_061.ab1   379 
  398  C USDA027R_B07_BF474569Td02P035F09P017G091R1_061.ab1   517 
  434    USDA027F_B07_BF474569Td02P035F09P017G091F1_061.ab1   419 
  446  C USDA027R_B07_BF474569Td02P035F09P017G091R1_061.ab1   469 
  458    USDA027F_B07_BF474569Td02P035F09P017G091F1_061.ab1   443 
  466  C USDA027R_B07_BF474569Td02P035F09P017G091R1_061.ab1   449 
  498    USDA027F_B07_BF474569Td02P035F09P017G091F1_061.ab1   483 
  506  C USDA027R_B07_BF474569Td02P035F09P017G091R1_061.ab1   409 
  558    USDA027F_B07_BF474569Td02P035F09P017G091F1_061.ab1   543 
  562  C USDA027R_B07_BF474569Td02P035F09P017G091R1_061.ab1   353 
  566    USDA027F_B07_BF474569Td02P035F09P017G091F1_061.ab1   551 
  574  C USDA027R_B07_BF474569Td02P035F09P017G091R1_061.ab1   341 
Contig length: old 916, new 914

Contig length: old 914, new 914
New start: 0