No. words: 1540; after pruning: 1514


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.5 (1,1:745)  739  0.00 0.13 0.00  USDA023F_B07_BF474569Td02P043A11P017G091F1_061.ab1        1   746 (41)  C USDA023R_B07_BF474569Td02P043A11P017G091R1_061.ab1   (6)   747     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1  C USDA023R_B07_BF474569Td02P043A11P017G091R1_061.ab1   753 
   22    USDA023F_B07_BF474569Td02P043A11P017G091F1_061.ab1    15 
   34  C USDA023R_B07_BF474569Td02P043A11P017G091R1_061.ab1   720 
   38    USDA023F_B07_BF474569Td02P043A11P017G091F1_061.ab1    31 
   54  C USDA023R_B07_BF474569Td02P043A11P017G091R1_061.ab1   700 
   58    USDA023F_B07_BF474569Td02P043A11P017G091F1_061.ab1    51 
   98  C USDA023R_B07_BF474569Td02P043A11P017G091R1_061.ab1   656 
  102    USDA023F_B07_BF474569Td02P043A11P017G091F1_061.ab1    95 
  106  C USDA023R_B07_BF474569Td02P043A11P017G091R1_061.ab1   648 
  110    USDA023F_B07_BF474569Td02P043A11P017G091F1_061.ab1   103 
  198  C USDA023R_B07_BF474569Td02P043A11P017G091R1_061.ab1   556 
  222    USDA023F_B07_BF474569Td02P043A11P017G091F1_061.ab1   215 
  302  C USDA023R_B07_BF474569Td02P043A11P017G091R1_061.ab1   452 
  314    USDA023F_B07_BF474569Td02P043A11P017G091F1_061.ab1   307 
  378  C USDA023R_B07_BF474569Td02P043A11P017G091R1_061.ab1   376 
  522    USDA023F_B07_BF474569Td02P043A11P017G091F1_061.ab1   515 
  530  C USDA023R_B07_BF474569Td02P043A11P017G091R1_061.ab1   224 
  602    USDA023F_B07_BF474569Td02P043A11P017G091F1_061.ab1   595 
  606  C USDA023R_B07_BF474569Td02P043A11P017G091R1_061.ab1   148 
  610    USDA023F_B07_BF474569Td02P043A11P017G091F1_061.ab1   603 
  614  C USDA023R_B07_BF474569Td02P043A11P017G091R1_061.ab1   140 
  742    USDA023F_B07_BF474569Td02P043A11P017G091F1_061.ab1   735 
Contig length: old 794, new 794

Contig length: old 794, new 794
New start: 0