No. words: 1441; after pruning: 1415


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:873)  558  0.35 0.00 0.00  USDA027F_C07_BF474569Td03P035F09P017G091F1_059.ab1       56   622 (0)  C USDA027R_C07_BF474569Td03P035F09P017G091R1_059.ab1   (0)   819   253 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1    USDA027F_C07_BF474569Td03P035F09P017G091F1_059.ab1     1 
  119  C USDA027R_C07_BF474569Td03P035F09P017G091R1_059.ab1   756 
  123    USDA027F_C07_BF474569Td03P035F09P017G091F1_059.ab1   123 
  235  C USDA027R_C07_BF474569Td03P035F09P017G091R1_059.ab1   640 
  239    USDA027F_C07_BF474569Td03P035F09P017G091F1_059.ab1   239 
  279  C USDA027R_C07_BF474569Td03P035F09P017G091R1_059.ab1   596 
  283    USDA027F_C07_BF474569Td03P035F09P017G091F1_059.ab1   283 
  291  C USDA027R_C07_BF474569Td03P035F09P017G091R1_059.ab1   584 
  351    USDA027F_C07_BF474569Td03P035F09P017G091F1_059.ab1   351 
  359  C USDA027R_C07_BF474569Td03P035F09P017G091R1_059.ab1   516 
  391    USDA027F_C07_BF474569Td03P035F09P017G091F1_059.ab1   391 
  403  C USDA027R_C07_BF474569Td03P035F09P017G091R1_059.ab1   472 
Contig length: old 874, new 874

Contig length: old 874, new 874
New start: 0