No. words: 1496; after pruning: 1470


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.5 (1,1:763)  694  0.00 0.14 0.00  USDA023F_C07_BF474569Td03P043A11P017G091F1_059.ab1        1   701 (0)  C USDA023R_C07_BF474569Td03P043A11P017G091R1_059.ab1   (30)   765    64 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C USDA023R_C07_BF474569Td03P043A11P017G091R1_059.ab1   795 
   53    USDA023F_C07_BF474569Td03P043A11P017G091F1_059.ab1    22 
   65  C USDA023R_C07_BF474569Td03P043A11P017G091R1_059.ab1   731 
   69    USDA023F_C07_BF474569Td03P043A11P017G091F1_059.ab1    38 
   81  C USDA023R_C07_BF474569Td03P043A11P017G091R1_059.ab1   715 
   93    USDA023F_C07_BF474569Td03P043A11P017G091F1_059.ab1    62 
  237  C USDA023R_C07_BF474569Td03P043A11P017G091R1_059.ab1   559 
  249    USDA023F_C07_BF474569Td03P043A11P017G091F1_059.ab1   218 
  261  C USDA023R_C07_BF474569Td03P043A11P017G091R1_059.ab1   535 
  269    USDA023F_C07_BF474569Td03P043A11P017G091F1_059.ab1   238 
  281  C USDA023R_C07_BF474569Td03P043A11P017G091R1_059.ab1   515 
  317    USDA023F_C07_BF474569Td03P043A11P017G091F1_059.ab1   286 
  325  C USDA023R_C07_BF474569Td03P043A11P017G091R1_059.ab1   471 
  341    USDA023F_C07_BF474569Td03P043A11P017G091F1_059.ab1   310 
  357  C USDA023R_C07_BF474569Td03P043A11P017G091R1_059.ab1   439 
  377    USDA023F_C07_BF474569Td03P043A11P017G091F1_059.ab1   346 
  385  C USDA023R_C07_BF474569Td03P043A11P017G091R1_059.ab1   411 
Contig length: old 795, new 795

Contig length: old 795, new 795
New start: 0