No. words: 1543; after pruning: 1517


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.9 (1,1:755)  740  0.13 0.13 0.00  USDA023F_D07_BF474569Td04P043A11P017G091F1_057.ab1        7   756 (33)  C USDA023R_D07_BF474569Td04P043A11P017G091R1_057.ab1   (3)   751     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1  C USDA023R_D07_BF474569Td04P043A11P017G091R1_057.ab1   754 
   22    USDA023F_D07_BF474569Td04P043A11P017G091F1_057.ab1    24 
   34  C USDA023R_D07_BF474569Td04P043A11P017G091R1_057.ab1   721 
   38    USDA023F_D07_BF474569Td04P043A11P017G091F1_057.ab1    40 
  114  C USDA023R_D07_BF474569Td04P043A11P017G091R1_057.ab1   641 
  118    USDA023F_D07_BF474569Td04P043A11P017G091F1_057.ab1   120 
  270  C USDA023R_D07_BF474569Td04P043A11P017G091R1_057.ab1   485 
  282    USDA023F_D07_BF474569Td04P043A11P017G091F1_057.ab1   284 
  366  C USDA023R_D07_BF474569Td04P043A11P017G091R1_057.ab1   389 
  742    USDA023F_D07_BF474569Td04P043A11P017G091F1_057.ab1   744 
Contig length: old 789, new 787

Contig length: old 787, new 787
New start: 0