No. words: 1497; after pruning: 1471


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.4 (1,1:893)  592  0.17 0.00 0.00  USDA027F_E07_BF474569Td05P035F09P017G091F1_055.ab1      195   797 (0)  C USDA027R_E07_BF474569Td05P035F09P017G091R1_055.ab1   (0)   700    98 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1    USDA027F_E07_BF474569Td05P035F09P017G091F1_055.ab1     1 
  362  C USDA027R_E07_BF474569Td05P035F09P017G091R1_055.ab1   533 
  366    USDA027F_E07_BF474569Td05P035F09P017G091F1_055.ab1   366 
  374  C USDA027R_E07_BF474569Td05P035F09P017G091R1_055.ab1   521 
  378    USDA027F_E07_BF474569Td05P035F09P017G091F1_055.ab1   378 
  398  C USDA027R_E07_BF474569Td05P035F09P017G091R1_055.ab1   497 
  406    USDA027F_E07_BF474569Td05P035F09P017G091F1_055.ab1   406 
  430  C USDA027R_E07_BF474569Td05P035F09P017G091R1_055.ab1   465 
  434    USDA027F_E07_BF474569Td05P035F09P017G091F1_055.ab1   434 
  450  C USDA027R_E07_BF474569Td05P035F09P017G091R1_055.ab1   445 
  466    USDA027F_E07_BF474569Td05P035F09P017G091F1_055.ab1   466 
  498  C USDA027R_E07_BF474569Td05P035F09P017G091R1_055.ab1   397 
  506    USDA027F_E07_BF474569Td05P035F09P017G091F1_055.ab1   506 
  514  C USDA027R_E07_BF474569Td05P035F09P017G091R1_055.ab1   381 
  526    USDA027F_E07_BF474569Td05P035F09P017G091F1_055.ab1   526 
  534  C USDA027R_E07_BF474569Td05P035F09P017G091R1_055.ab1   361 
Contig length: old 894, new 894

Contig length: old 894, new 894
New start: 0