No. words: 1461; after pruning: 1435


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.9 (1,1:880)  573  0.00 0.00 0.00  USDA027F_F07_BF474569Td06P035F09P017G091F1_053.ab1      185   764 (0)  C USDA027R_F07_BF474569Td06P035F09P017G091R1_053.ab1   (0)   697   118 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1    USDA027F_F07_BF474569Td06P035F09P017G091F1_053.ab1     1 
  416  C USDA027R_F07_BF474569Td06P035F09P017G091R1_053.ab1   466 
  432    USDA027F_F07_BF474569Td06P035F09P017G091F1_053.ab1   432 
  436  C USDA027R_F07_BF474569Td06P035F09P017G091R1_053.ab1   446 
  444    USDA027F_F07_BF474569Td06P035F09P017G091F1_053.ab1   444 
  448  C USDA027R_F07_BF474569Td06P035F09P017G091R1_053.ab1   434 
  452    USDA027F_F07_BF474569Td06P035F09P017G091F1_053.ab1   452 
  464  C USDA027R_F07_BF474569Td06P035F09P017G091R1_053.ab1   418 
  468    USDA027F_F07_BF474569Td06P035F09P017G091F1_053.ab1   468 
  480  C USDA027R_F07_BF474569Td06P035F09P017G091R1_053.ab1   402 
  504    USDA027F_F07_BF474569Td06P035F09P017G091F1_053.ab1   504 
  512  C USDA027R_F07_BF474569Td06P035F09P017G091R1_053.ab1   370 
  544    USDA027F_F07_BF474569Td06P035F09P017G091F1_053.ab1   544 
  548  C USDA027R_F07_BF474569Td06P035F09P017G091R1_053.ab1   334 
Contig length: old 881, new 881

Contig length: old 881, new 881
New start: 0