No. words: 1476; after pruning: 1450


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.1 (1,1:732)  720  0.00 0.00 0.00  USDA023F_F07_BF474569Td06P043A11P017G091F1_053.ab1        1   723 (0)  C USDA023R_F07_BF474569Td06P043A11P017G091R1_053.ab1   (20)   733    11 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  364 nodes

 184 str. conn. components

Path
    1  C USDA023R_F07_BF474569Td06P043A11P017G091R1_053.ab1   753 
   24    USDA023F_F07_BF474569Td06P043A11P017G091F1_053.ab1     4 
   56  C USDA023R_F07_BF474569Td06P043A11P017G091R1_053.ab1   698 
   60    USDA023F_F07_BF474569Td06P043A11P017G091F1_053.ab1    40 
   88  C USDA023R_F07_BF474569Td06P043A11P017G091R1_053.ab1   666 
   92    USDA023F_F07_BF474569Td06P043A11P017G091F1_053.ab1    72 
  120  C USDA023R_F07_BF474569Td06P043A11P017G091R1_053.ab1   634 
  124    USDA023F_F07_BF474569Td06P043A11P017G091F1_053.ab1   104 
  208  C USDA023R_F07_BF474569Td06P043A11P017G091R1_053.ab1   546 
  244    USDA023F_F07_BF474569Td06P043A11P017G091F1_053.ab1   224 
  252  C USDA023R_F07_BF474569Td06P043A11P017G091R1_053.ab1   502 
  296    USDA023F_F07_BF474569Td06P043A11P017G091F1_053.ab1   276 
  308  C USDA023R_F07_BF474569Td06P043A11P017G091R1_053.ab1   446 
  316    USDA023F_F07_BF474569Td06P043A11P017G091F1_053.ab1   296 
  336  C USDA023R_F07_BF474569Td06P043A11P017G091R1_053.ab1   418 
  340    USDA023F_F07_BF474569Td06P043A11P017G091F1_053.ab1   320 
  344  C USDA023R_F07_BF474569Td06P043A11P017G091R1_053.ab1   410 
Contig length: old 753, new 753

Contig length: old 753, new 753
New start: 0