No. words: 1456; after pruning: 1430


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:877)  548  0.87 0.00 0.35  USDA027F_G07_BF474569Td07P035F09P017G091F1_051.ab1      112   689 (0)  C USDA027R_G07_BF474569Td07P035F09P017G091R1_051.ab1   (0)   767   192 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1    USDA027F_G07_BF474569Td07P035F09P017G091F1_051.ab1     1 
  255  C USDA027R_G07_BF474569Td07P035F09P017G091R1_051.ab1   624 
  259    USDA027F_G07_BF474569Td07P035F09P017G091F1_051.ab1   259 
  295  C USDA027R_G07_BF474569Td07P035F09P017G091R1_051.ab1   584 
  311    USDA027F_G07_BF474569Td07P035F09P017G091F1_051.ab1   311 
  323  C USDA027R_G07_BF474569Td07P035F09P017G091R1_051.ab1   556 
  327    USDA027F_G07_BF474569Td07P035F09P017G091F1_051.ab1   327 
  343  C USDA027R_G07_BF474569Td07P035F09P017G091R1_051.ab1   536 
  351    USDA027F_G07_BF474569Td07P035F09P017G091F1_051.ab1   351 
  367  C USDA027R_G07_BF474569Td07P035F09P017G091R1_051.ab1   512 
  447    USDA027F_G07_BF474569Td07P035F09P017G091F1_051.ab1   447 
  451  C USDA027R_G07_BF474569Td07P035F09P017G091R1_051.ab1   428 
Contig length: old 878, new 878

Contig length: old 878, new 878
New start: 0